I am opening two new threads for Paul questions in his last post to " loading 
jmol file from 
open babel"

On 29 Jan 2007 at 10:44, H. Paul Benton wrote:

[snip]
>  To all the other uses I have one more question to ask "Can Jmol get the 
> molecule it a 3D 
> manner, so it looks at the bond angles?" 

Paul, what do you exactly mean? I guess your files may be 2D, then it's not 
Jmol fault. If the 
loaded file has 3D coordinates, Jmol will show it 3D. But sometimes models have 
only 2D, 
then there is nothing that can be done by Jmol.


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