David Leader wrote: >I have now sorted things out and established that: > >1. 'restrict (0)' supported in Jmol 10 has to be replaced by 'restrict none' >I don't mind that. I knew it was a silly hack when I couldn't get >things to work for some other reason and should have changed it. >2. The edited pdb files with Hydrogens added screw up the parsing of >certain atoms in Jmol 11 and give them a clubfoot appearance. Why >Jmol 10 tolerated this I'm not sure. Anyway, one can hardly blame >Jmol. I've had so much grief processing Richardson 500 files. The 228 >in my database are from 300 - 70 thrown away. I can see my having to >scan all 228 files by eye for this sort of format problem. > > this is fixed in the latest development version of Jmol.
>3. I think there is a bug in jmolSetCheckboxGroup(). > >I have mounted one of my tests that illustrates this at: ><http://doolittle.ibls.gla.ac.uk/leader/jmoltest/> > >As regards the jmol.js bug, check All Motifs and then uncheck any of >the ones below. All remains checked. Other aspects of it are ok. >I apologize for not testing this before, as I asked for this sort of >thing to be incorporated. > > Hmm. Maybe. >As regards the bad display, select single motif display and then >Catmat: 48,48,50 . Glu 50 is screwed up. > > > This is the configurations issue. Check that out. >If you want to see the Jmol10 version, go to: ><http://doolittle.ibls.gla.ac.uk/motif> >choose Ligand Proximity and 1MFM and 3D Display to see the >corresponding Jmol10 version done on the fly from the database. > >David > > > > ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
