Regarding my problem with Jmol 11 using Richardson 500 files, Bob wrote: > Yes, it was because that format they use involves short lines -- no > filling to 80 characters. > I just had a statement in there that presumed full-width PDB files; > that's gone now, and I don't > see any other situations in that reader that would cause this > exception > again.
and said the problem was fixed in 11.1. I just downloaded 11.1.31 from Sourceforge, but it gives exactly the same problem. Running the file from the jar as an app I get more info (for 1AYL): Error reading file at line 519 HET ATP 541 34 String Index out of range 70 And similarly for the other files, it's choking on the short HET lines, which are filled with spaces in the files downloaded from RCSB PDB. I was doubting I had the right version, but in the Scripting Console the State command confirms 11.1.31. David PS Let's leave the other problems until I've got this sorted (if I do). They still occur, but they are probably just poor or obsolete command series on my part. I don't use Jmol for my own research, as it were, I just want to provide views of stuff pulled from a server for a colleague who uses RasMol all the time. Hence my scripts are a bit bastard. ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
