Right now Jmol does not support user-derived color schemes. It's on the 
list of things to support, but it is not there yet. A color scheme is 
simply a list of color values, which are integers, so in principle, this 
is not too difficult -- we just need to have a data statement that can 
load these into a named color scheme. This is a good feature request. 
Please do introduce it as such.

Bob


Mauricio Carrillo Tripp wrote:

> Hi,
>
> Is there a way I can change the color scheme for chains in a protein? 
> the one that comes with jmol
> is different from what I need, and I have to select chain by chain and 
> color it according to my scheme,
> I just want to save these steps if possible (saving code too)...
>
> I've seen the discussions regarding having a standardized scheme and I 
> agree, but in my case I
> need to have consistent coloring in my app with previous works 
> (standardized differently from jmol)
>
> -- 
>          0     |  Mauricio Carrillo Tripp, PhD
>       /         |     Department of Molecular Biology
>   0            |     The Scripps Research Institute
>       \         |     10550 North Torrey Pines Road
>          0     |     La Jolla, California 92037
>       /         |     [EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]>
>   0            |  http://www.scripps.edu/
>
> ** Aut tace aut loquere meliora silentio **
>
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