Karl Oberholser wrote: > Bob, > > The attached .ent file is the focus of my interest now, but I have > also tried displaying hbonds in a pdb file without success. I made > the ent file more than a decade ago using HyperChem and am trying to > port it to Jmol. I originally made it as a hin file. In addition to > converting it to an ent file, I added letter identifiers to the 12 > different peptides.
OK, that explains it. "hbonds calculate" only calculates hydrogen bonds within chains. You are wanting hydrogen bonds between chains. That you have to do with the connect command. I'll see if that's possible in this case. Could be very tricky. Bob -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
