somy ork wrote: > I want to label the alternate conformations of atoms in a protein. > for example if residue number 34 (ALA) has 2 conformations, > i want to display it as > ALA:A > ALA:B > I am able to display the label ALA but not A and B. > Where as i can display it as mentioned above in Rasmol. > but not in Jmol. > how do i go about it? > Are you sure that in your file you have alternate locations A and B? Angel's answer works for me.
label %n:%A Those are chains, not alternate locations. Alternate locations are selected using ALA%A ALA%B Easier, though, is to use the configuration command: configuration 0 configuration 1 Then it doesn't matter what the author used for the character for the alternate location. But I realize your question was about labeling, not displaying. See http://chemapps.stolaf.edu/jmol/docs/examples-11/altloc.htm --Bob Hanson - Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
