I have a PDB model of a beta turn (attached). With "hbonds calculate", Jmol finds the expected Hbond and draws it between O and N. I want to have instead an H bond going from O to H, so I decided not to calculate Hbonds and to define my own using "connect".
However, I am finding that Jmol is adding and showing the calculated-would-be bond too, and even removing the given one. This only happens on my model when it has 2 alternative configurations. 1. Load the model 2. Change between the 2 alternates, using pop-up menu -- everything OK 3. Now do "connect (159.O%A) (162.H%A) hbond" 4. Repeat step 2 and see how the non-intended Hbond shows up and the defined one even dissapears Tested on 11.2.14 and 11.3.41 Thanks for any clues
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Date: 6 Nov 2007, 23:25
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