Well, I'm Ok with any turn-around-the problem fix, and I had already figured out another one: define my Hbond and delete all N-O Hbonds every time.
But... On 7 Nov 2007 at 15:01, Bob Hanson wrote: > This is there to recreate the hydrogen bonds if they have been > calculated for one conformation, and then another is displayed. I had NOT invoked calculation of Hbonds. Why should they be calculated when changing between conformations? > The solution is to use > > connect (159.O%A) (162.H%A) partial 1.1 > > This makes a bond that Looks like a hydrogen bond, but is really a partial > bond. Thanks! ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users

