I've added calculate polymers
What this does, after making connections, is to recalculate the polymer chains that underly traces and such. So if bonds are missing and you can make them, then you can use this method to generate a new set of polymers. When "calculate polymers" is executed, all bioshapes (cartoon, rockets, etc.) are deleted. Bob Angel Herraez wrote: >El 19 Nov 2007 a las 22:42, Bob Hanson escribió: >[snip] > > >>right -- those biopolymers are created once per model. The P-O bonds are >>indeed too long. So that's not great data. >> >> > >Well, it's only 5A resolution. But it is the ribosome, so it's really >GREAT data! :-D > > >[snip] > > >>Or, is it the opinion that this is NOT a bug and the trace should NOT >>complete when the P-P distance is so long? >> >> > >My feelings are that, if a chain ID is in place, and there are >correlative residue numbers, the trace should be generated for any >distance. > > > possibly.... let's leave it with a somewhat larger maximum distance between P atoms for now. >I will check your other comments, but I think the situation is clear: >too long distances prevent the trace from being drawn. > > > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Microsoft >Defy all challenges. Microsoft(R) Visual Studio 2005. >http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
