PAUL, this is possible, and with Jmol 11.3.46 it will be especially good. # 1: create the surfaceDistance property values
select whatever; calculate surface # 2: create the isosurface isosurface select(someAtoms) ignore(whatever) sasurface /* or MOLECULAR */ map property surfaceDistance In the current version of Jmol, this produces sort of a patchy isosurface, because the color of any piece of the isosurface due to a given atom is based on just that atom's property value. In Jmol 11.3.46 this will be much smoother. The patchy look can be created if desired using set isosurfacePropertySmoothing false Bob [EMAIL PROTECTED] wrote: > Hello Jmolers, > I would like to know if there is a way to color an isosurface with a gradient > mapping the distance from the different vertex to the selection set. There is > a similar function in chime which allows to emphasize the contacts between > two chains (contact surface in protein explorer). > My aim is to show the contacts between an antibody and an antigen. > Thanks in advance if you have any clue for doing that. > Paul > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2005. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
