Hi All,
After updating to ver 11.3.48 this morning I have not been able to do the
cavity computation. I get the following message from the Java console:
Exception in thread "Thread-26" java.lang.ArrayIndexOutOfBoundsException:
-1
at org.jmol.modelset.ModelCollection.getModelNumberDotted(Unknown Source)
at org.jmol.modelset.ModelSet.fillAtomData(Unknown Source)
at org.jmol.viewer.Viewer.fillAtomData(Unknown Source)
at org.jmol.geodesic.EnvelopeCalculation.calculate(Unknown Source)
at org.jmol.modelset.AtomCollection.calculateSurface(Unknown Source)
at org.jmol.viewer.Viewer.calculateSurface(Unknown Source)
at org.jmol.shapespecial.Isosurface.calculateGeodesicSurface(Unknown
Source)
at org.jmol.jvxl.readers.IsoSolventReader.setup(Unknown Source)
at org.jmol.jvxl.readers.VolumeDataReader.readVolumeParameters(Unknown
Source)
at org.jmol.jvxl.readers.VoxelReader.createIsosurface(Unknown Source)
at org.jmol.jvxl.readers.SurfaceGenerator.generateSurface(Unknown Source)
at org.jmol.jvxl.readers.SurfaceGenerator.processState(Unknown Source)
at org.jmol.jvxl.readers.SurfaceGenerator.setParameter(Unknown Source)
at org.jmol.shapespecial.Isosurface.setProperty(Unknown Source)
at org.jmol.modelset.ModelSet.setShapeProperty(Unknown Source)
at org.jmol.viewer.Viewer.setShapeProperty(Unknown Source)
at org.jmol.viewer.Eval.setShapeProperty(Unknown Source)
at org.jmol.viewer.Eval.isosurface(Unknown Source)
at org.jmol.viewer.Eval.instructionDispatchLoop(Unknown Source)
at org.jmol.viewer.Eval.script(Unknown Source)
at org.jmol.viewer.Eval.instructionDispatchLoop(Unknown Source)
at org.jmol.viewer.Eval.runEval(Unknown Source)
at org.jmol.viewer.Viewer.evalStringWaitStatus(Unknown Source)
at org.jmol.viewer.ScriptManager.runScript(Unknown Source)
at org.jmol.viewer.ScriptManager.runNextScript(Unknown Source)
at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
I never had this problem before and am using the same command format.
Karl
Karl M. Oberholser, Ph.D. Phone:
Professor of Chemistry Voice: 717-766-0512
Chemistry & Biochemistry Dept. Fax: 717-691-6046
Messiah College e-mail: [EMAIL PROTECTED]
P.O. Box 3049
One College Avenue
Grantham, Pa 17027
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