very sorry -- that just got corrected, though. Fixed in 11.3.49. It should be available.
Karl Oberholser wrote: > Hi All, > After updating to ver 11.3.48 this morning I have not been able to do > the cavity computation. I get the following message from the Java console: > > Exception in thread "Thread-26" > java.lang.ArrayIndexOutOfBoundsException: -1 > at org.jmol.modelset.ModelCollection.getModelNumberDotted(Unknown Source) > at org.jmol.modelset.ModelSet.fillAtomData(Unknown Source) > at org.jmol.viewer.Viewer.fillAtomData(Unknown Source) > at org.jmol.geodesic.EnvelopeCalculation.calculate(Unknown Source) > at org.jmol.modelset.AtomCollection.calculateSurface(Unknown Source) > at org.jmol.viewer.Viewer.calculateSurface(Unknown Source) > at org.jmol.shapespecial.Isosurface.calculateGeodesicSurface(Unknown > Source) > at org.jmol.jvxl.readers.IsoSolventReader.setup(Unknown Source) > at > org.jmol.jvxl.readers.VolumeDataReader.readVolumeParameters(Unknown > Source) > at org.jmol.jvxl.readers.VoxelReader.createIsosurface(Unknown Source) > at org.jmol.jvxl.readers.SurfaceGenerator.generateSurface(Unknown Source) > at org.jmol.jvxl.readers.SurfaceGenerator.processStat e(Unknown Source) > at org.jmol.jvxl.readers.SurfaceGenerator.setParameter(Unknown Source) > at org.jmol.shapespecial.Isosurface.setProperty(Unknown Source) > at org.jmol.modelset.ModelSet.setShapeProperty(Unknown Source) > at org.jmol.viewer.Viewer.setShapeProperty(Unknown Source) > at org.jmol.viewer.Eval.setShapeProperty(Unknown Source) > at org.jmol.viewer.Eval.isosurface(Unknown Source) > at org.jmol.viewer.Eval.instructionDispatchLoop(Unknown Source) > at org.jmol.viewer.Eval.script(Unknown Source) > at org.jmol.viewer.Eval.instructionDispatchLoop(Unknown Source) > at org.jmol.viewer.Eval.runEval(Unknown Source) > at org.jmol.viewer.Viewer.evalStringWaitStatus(Unknown Source) > at org.jmol.viewer.ScriptManager.runScript(Unknown Source) > at org.jmol.viewer.ScriptManager.runNextScript(Unknown Source) > at org.jmol.viewer.ScriptManager$ScriptQueueRunnable.run(Unknown Source) > at java.lang.Thread.run(Unknown Source) > I never had this problem before and am using the same command format. > > Karl > > > > Karl M. Oberholser, Ph.D. Phone: > Professor of Chemistry Voice: 717-766-0512 > Chemistry & Biochemistry Dept. Fax: 717-691-6046 > Messiah College e-mail: [EMAIL PROTECTED] > P.O. Box 3049 > One College Avenue > Grantham, Pa 17027 > > >------------------------------------------------------------------------ > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Microsoft >Defy all challenges. Microsoft(R) Visual Studio 2005. >http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > >------------------------------------------------------------------------ > >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
