lijo skb wrote: > I have two set of protiens, 1) Hub- Protiens those can intract more > than two nuber of proteins. Usually in a PPi network, a protien will > act as hub to connect other protiens. > 2) Non-Hub-Proteins those have only less intracion profile than the > Hub proteins.
Sorry, I can't imagine how you can do that automatically. You could work out the distance between centers of each protein, but that does not necessarily mean "interaction". Do you have a single coordinates file where all the proteins are included? What parameter would you use to define contact or interaction? ------------------------------------------------------------------------- This SF.net email is sponsored by the 2008 JavaOne(SM) Conference Don't miss this year's exciting event. There's still time to save $100. Use priority code J8TL2D2. http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
