Hi Rich

I see your point --more or less--. I gather that you want some more commands 
included in 
the top menu, and a custom startup set of options. To do that, you'd have to 
modify the 
source code and package it into a custom Jmol.jar file.

But following your description and comments, I also think that you may be best 
served by 
the applet, so you should consider about offering your users a webpage with the 
applet.

1.- I don't think that the app and the applet have different needs. You can 
work nearly the 
same in both, and do similar things.

2.- Your users could just connect to your page and see the structures you 
provide from the 
server, without the need for downloading anything. But you can also offer the 
page+applet+structures as a download for local study.
 
3.- You can customize the initial setup more and more easily in a webpage than 
in a custom 
app. E.g.: set the initial display (nr. of molecules, unti cells etc.), set the 
initial center of 
rotation to the center of the displayed atoms, show file info, etc.  You can 
also customize 
the pop-up menu, or even hide it completely and leave only available the 
commands you 
decide to pre-program, either in the menu or in the page.

4.- The web page will be more easy and intuitive to a new user, as you can 
include help, 
explanations, captions, buttons, menus etc. that are known to the user in look 
and feel.

Hope it is of help.


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