The jar files at http://chemapps.stolaf.edu/jmol/docs/examples-11 have 11.5.43_dev, which allows reading that file using
load trajectory 2hyn.pdb.gz (I HIGHLY recommend the .gz -- that's a 13 MB file zipped; 64 MB unzipped.) Note that you can certainly load one model -- just load =2hyn 1 Rolf Huehne wrote: >Eran Hodis wrote: > > >>Does the PDB file 2hyn load in Jmol for anyone? It is an NMR model with 184 >>structures... >> >> > >On Linux with Java 1.4.2_13 there were needed about 1 GB of memory to >load '2hyn' into the Jmol application (version 11.5.35). > >So I think you should have at least 2 GB main memory (RAM) available. >And you have to increase the maximum heap size for example to ~1.2 GB >with the option '-Xmx1260m'. >On Linux you can just enter it in the command-line: > java -Xmx1260m -jar Jmol.jar > >On Windows you can configure this in the Java settings. But it various >with the Java version were you can enter the options for the >application. Those for the applet are set independantly. > >You can see two pictures of '2hyn' (first model, all models) that were >automatically generated with Jmol on our JenaLib atlas page for '2hyn': > >http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=2hyn > >(The manually generated picture was made with Pymol.) > >Regards, >Rolf > >------------------------------------------------------------------------- >Check out the new SourceForge.net Marketplace. >It's the best place to buy or sell services for >just about anything Open Source. >http://sourceforge.net/services/buy/index.php >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://sourceforge.net/services/buy/index.php _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
