Hi Angel,
Angel Herráez wrote:
> In my experience, the only safe solution is to have Jmol call the
> javascript, and to include that call in the jmolApplet() call itself.
>
> So, it could be something like
>
> jmolApplet(300, 'load myFile.cif; javascript "parseAtoms()"; ')
>
I tried what you suggested but I still have the same intermittent
problem: sometimes the call to jmolGetPropertyAsArray("atomInfo", "all")
returns nothing, presumably because Jmol has not finished initialising
at that point. Other times, I do get a property array back, but the
inidividual objects within the array don't have an 'info' property for
some reason, so my function still fails but in a different place.
It seems that even if I call my javascript function from within the Jmol
scripting layer itself, it still doesn't seem to run in a synchronised
fashion. I even tried setting my function as a callback:
set LoadStructCallback "jmol_update_disorder()";
I assumed this would guarantee that my javascript wouldn't run until
after Jmol has finished loading the molcule, but sadly this too suffers
from the same intermittent problem. Is this an example of a more general
Jmol scripting problem?
Unless anyone has any other suggestions, it appears I will have to
abandon my new functionality completely as I'm out of ideas and I cannot
get it to work reliably. :-(
Thanks for your help,
Ian
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