this "A" is called the "alternate location" -- you specify that using the %
sign.
Select 1%A
2009/4/21 张增明( Zengming Zhang ) <[email protected]>
> Hello jmol-users：
>
> How can I select one of residues when the chain IDs are same, just as
> below(part of an PDB file):
>
> ATOM 11 N ASP L 1A 60.262 29.089 14.012 1.00
> 33.13 N
> ATOM 12 CA ASP L 1A 59.378 30.016 14.691 1.00
> 35.05 C
> ATOM 13 C ASP L 1A 57.965 29.526 14.760 1.00
> 31.74 C
> ATOM 14 O ASP L 1A 57.476 28.873 13.851 1.00
> 36.72 O
> ATOM 15 CB ASP L 1A 59.593 31.557 14.587 1.00
> 41.32 C
> ATOM 16 CG ASP L 1A 58.724 32.268 13.564 1.00
> 46.17 C
> ATOM 17 OD1 ASP L 1A 57.452 32.455 13.924 1.00
> 47.60 O
> ATOM 18 OD2 ASP L 1A 59.188 32.658 12.472 1.00
> 48.99 O
> ATOM 19 N CYS L 1 57.321 29.802 15.860 1.00
> 22.52 N
> ATOM 20 CA CYS L 1 56.005 29.353 16.036 1.00
> 15.35 C
> ATOM 21 C CYS L 1 55.351 30.160 17.077 1.00
> 15.83 C
> ATOM 22 O CYS L 1 56.002 30.636 17.968 1.00
> 18.73 O
> ATOM 23 CB CYS L 1 56.053 27.903 16.554 1.00
> 11.00 C
> ATOM 24 SG CYS L 1 56.917 27.711 18.163 1.00
> 11.39 S
>
> residue ASP's chain ID and CYS's chain ID are same, they use icode(icode of
> ASP is A and icode of CYS has no icode) to be seperated.
> Now, I want so select residue ASP, the script is below:
>
> "select 1A:L; color blue;" but it can not work.
>
> and I changed the script to be this:
> "select 1:L; color blue;" and residue CYS is selected, not ASP.
>
> So, can I write scripts to select the residue ASP not CYS?
>
> Can you help me? thank you very much!
>
> best wishes
> Zengming Zhang ，[email protected]
> 2009-04-21
> Tel: +86-0571-86971772
> Mobile:+86-13408688196
> MSN: [email protected]
> QQ: 454705936
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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