Quoting Robert Hanson <[email protected]>: > this "A" is called the "alternate location" -- you specify that using the % > sign. > > Select 1%A > Bob, this is not correct. As Zengming already pointed out in his question it is the insertion code (icode). So the selection command would be:
select 1^A:L Regards, Rolf > > > 2009/4/21 ???( Zengming Zhang ) <[email protected]> > >> Hello jmol-users? >> >> How can I select one of residues when the chain IDs are same, just as >> below(part of an PDB file): >> >> ATOM 11 N ASP L 1A 60.262 29.089 14.012 1.00 >> 33.13 N >> ATOM 12 CA ASP L 1A 59.378 30.016 14.691 1.00 >> 35.05 C >> ATOM 13 C ASP L 1A 57.965 29.526 14.760 1.00 >> 31.74 C >> ATOM 14 O ASP L 1A 57.476 28.873 13.851 1.00 >> 36.72 O >> ATOM 15 CB ASP L 1A 59.593 31.557 14.587 1.00 >> 41.32 C >> ATOM 16 CG ASP L 1A 58.724 32.268 13.564 1.00 >> 46.17 C >> ATOM 17 OD1 ASP L 1A 57.452 32.455 13.924 1.00 >> 47.60 O >> ATOM 18 OD2 ASP L 1A 59.188 32.658 12.472 1.00 >> 48.99 O >> ATOM 19 N CYS L 1 57.321 29.802 15.860 1.00 >> 22.52 N >> ATOM 20 CA CYS L 1 56.005 29.353 16.036 1.00 >> 15.35 C >> ATOM 21 C CYS L 1 55.351 30.160 17.077 1.00 >> 15.83 C >> ATOM 22 O CYS L 1 56.002 30.636 17.968 1.00 >> 18.73 O >> ATOM 23 CB CYS L 1 56.053 27.903 16.554 1.00 >> 11.00 C >> ATOM 24 SG CYS L 1 56.917 27.711 18.163 1.00 >> 11.39 S >> >> residue ASP's chain ID and CYS's chain ID are same, they use icode(icode of >> ASP is A and icode of CYS has no icode) to be seperated. >> Now, I want so select residue ASP, the script is below: >> >> "select 1A:L; color blue;" but it can not work. >> >> and I changed the script to be this: >> "select 1:L; color blue;" and residue CYS is selected, not ASP. >> >> So, can I write scripts to select the residue ASP not CYS? >> >> Can you help me? thank you very much! >> >> best wishes >> Zengming Zhang [email protected] >> 2009-04-21 >> Tel: +86-0571-86971772 >> Mobile:+86-13408688196 >> MSN: [email protected] >> QQ: 454705936 >> >> >> ------------------------------------------------------------------------------ >> Stay on top of everything new and different, both inside and >> around Java (TM) technology - register by April 22, and save >> $200 on the JavaOne (SM) conference, June 2-5, 2009, San Francisco. >> 300 plus technical and hands-on sessions. Register today. >> Use priority code J9JMT32. http://p.sf.net/sfu/p >> _______________________________________________ >> Jmol-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > ---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program. ------------------------------------------------------------------------------ Stay on top of everything new and different, both inside and around Java (TM) technology - register by April 22, and save $200 on the JavaOne (SM) conference, June 2-5, 2009, San Francisco. 300 plus technical and hands-on sessions. Register today. Use priority code J9JMT32. http://p.sf.net/sfu/p _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
