Quoting Angel Herráez <[email protected]>:

> Hello Phil, and welcome to Jmol!
>
> Let's see:
>
>> <script type="text/javascript">
>> jmolCheckbox("script ./Pgradsorted", "script ./reset", "Chain P" )
>> </script>
>
> This is OK, but the "script" command assumes that the following is   
> the name of a file. From
> your description, I am not sure if you have a plain-text file with   
> the name "Pgradsorted" and
> another named "reset" (both with no extension). Please make sure of   
> that first. Maybe
> having a file extension like "spt" or "txt" helps (it shouldn't make  
>  a difference, but particularly
> from a web server extensions sometimes matter).
>
>
>> my script Pgradsorted contains2 commands per amino acid ~ 200 commands
>
> OK, as long as you mean "your script file", as I said above.
>
>
>> the top 10 lines of the script are:-
>> $ head Pgradsorted
>
> I don't see what this $ line is, but it may be blocking Jmol from   
> reading the content as a
> script, since it will not understand that "command".
> Apart from that, everything looks good.
>
I think the '$' line is not part of the file but just shows the  
standard Unix/Linux command 'head' that Phil used to display the first  
lines of the file 'Pgradsorted'. The '$' sign at the beginning is the  
prompt displayed by the Unix/linux command shell to say it is ready to  
accept a command.

Regards,
Rolf

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