I'd like to ask a slightly more general question about unique visualization 
properties.

Would I be correct in saying the following?

The following visualization properties can be applied to a selected set of 
atoms:

select <some set of atoms>;
color atoms TRANSLUCENT <some number>;
bonds on; color bond TRANSLUCENT <some number>;
color hbond TRANSLUCENT <some number>;
spacefill <some number>%;

while the following properties ignore the selection and are applied to all 
elements:

set specularPower <some number>;
set diffusePercent <some number>;
set dotDensity <some number>;
set specularPercent <some number>;

Thanks,

--Chuck

----- Original Message ----- 
From: "Angel Herráez" <[email protected]>
To: <[email protected]>
Sent: Monday, August 17, 2009 6:12 AM
Subject: Re: [Jmol-users] unique measurement visualization properties


> Hi Geoff
>
> The documentation isn't specific about your query, so I've done a little 
> testing. This is the
> result:
>
> - Font and line thickness are shared by all measurements.
> - Color may be different per measurement. The way to do is: first set the 
> color, then set the
> measure. This works except for the first measure, which takes the first 
> declared color even
> if it is done later. So:
> color (for measure 1)
> measure (1)
> color (for measure 2)
> measure (2)
> etc.
>
> As an alternative, you might find a use for use DRAWn lines, which can be 
> controlled
> individually and can also have a text attached to them (but only located 
> beside one of the
> atoms, not in the middle).
> Examples:
>
> draw m1 "0.3 nm" color [xAAFF00] width 0.05 (atomno=2)(atomno=4)
>
> measure 1 2; draw m2 color [xFFAA00] width 0.05 (atomno=1)(atomno=2)
>
> Hope it helps. Good luck
>
>
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