Hello- Two Questions:
1) We are using the JME drawing applet to pass structures directly to Jmol. After the drawn 2D structure has loaded, we automatically run it through Jmol's new UFF routine. We find that we can give the UFF routine some help if we use JME wedge bonds to pre-define our stereochemistry. This works very nicely, but the resulting 3D Jmol structure retains a wedge shaped bond. I've tried playing with wireframe and spacefill commands to clean this up, but I have had no success. Is there any way to force these bonds back to normal wireframe and spacefill compliance? 2) An unrelated question: While loading mol2 files generated in Spartan, we seem to be seeing the completion of the 3d model loading before the completion of charge and mo data loading. Is there any internal loading completion flag that Jmol can pass to JavaScript to signal that all data is ready to go? At the risk of repeating myself too often, the UFF addition to Jmol simply delightful. Thanks again to the developers responsible for including this. Best Regards, Otis -- Otis Rothenberger http://chemagic.org ------------------------------------------------------------------------------ Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
