Angel- My JavaScript code passes a JME string. I go into Jmol with this via the following JavaScript:
document.getElementById(pickApplet).loadInlineString(jmeString, "", false); pickApplet and jmeString are variables of my definition. Here is the JME string for wedge bonded cyclohexane directly from JME: 18 18 H 10.10 -7.17 H 10.10 -5.77 H 10.10 -4.37 H 8.88 -3.67 H 7.67 -8.57 H 8.88 -7.87 H 7.67 -2.97 H 6.46 -3.67 H 5.25 -7.17 H 6.46 -7.87 H 5.25 -4.37 H 5.25 -5.77 C 8.88 -6.47 C 8.88 -5.07 C 7.67 -7.17 C 7.67 -4.37 C 6.46 -6.47 C 6.46 -5.07 13 1 -2 13 2 -1 14 3 -2 14 4 -1 15 5 -2 15 6 -1 16 7 -2 16 8 -1 17 9 -2 17 10 -1 18 11 -2 18 12 -1 13 14 1 13 15 1 14 16 1 15 17 1 16 18 1 17 18 1 I'll be darned if I can see stereo information about bond type here, but I'm no expert on decoding the JME string. FYI, here is the SMILES string that JME generates for this structure: [h...@]1([H])[C@@]([H])([H])[C@@]([H])([H])[C@@]([H])([H])[C@@]([H])([H])[C@@]1([H])[H] Otis 2009/12/8 Angel Herráez <[email protected]>: > Hi again Otis > > 1. I did not receive your first post or the image, but now I've seen it > inside Jmol > > 2. I'm astounded. Never saw that wedge bond before. It must be a relic from > old Jmol > versions. > > 3. I cannot follow your source code enough to see what it is you are passing > into Jmol. It is > not MOL data, right? > I.e., what is the dtaa format your are using for the exchange? The problem > must lie in > Jmol's parser for that format > > > ------------------------------------------------------------------------------ > Return on Information: > Google Enterprise Search pays you back > Get the facts. > http://p.sf.net/sfu/google-dev2dev > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > -- Otis Rothenberger http://chemagic.org ------------------------------------------------------------------------------ Return on Information: Google Enterprise Search pays you back Get the facts. http://p.sf.net/sfu/google-dev2dev _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
