Thank you so much for your help. But I have one more question. Is there a way for me to lets say if the user clicks on "ball and stick" viewing format, then I want to change the size of the ball through set percentVdwAtom ()? Because I want to change the size of the ball according to its BFactor and make it so that different ball have different size. I basically need help with the mouse listener function for ball and stick format.
Thanks. Or On Thu, Jan 7, 2010 at 4:47 AM, Rolf Huehne <[email protected]> wrote: > On 01/07/2010 04:10 AM, Andy Lu wrote: > > Hi, I am using JMol script within my java application. > > > > I got the select function to work, but how would I go about for invert > > Selection? It's not working for me. > For this purpose you can use the predefined atom set "selected". This > set contains all currently selected atoms. So the command would be: > > select not selected > > Because the "select" command always unselects all atoms that are not > selected by the provided selection expression, the previously selected > atoms are deselected. This way you get the desired inversion. > > Similarly, if you want to add atoms to the current selection, you must > include "selected" in your selection expression, e.g.: > > select selected OR protein > > For details on atom expressions and selections please look at the > interactive scripting documentation: > > http://www.imb-jena.de/ImgLibPDB/Jena3D/doc/jmol_scripting/index.htm#atomexpressions > http://www.imb-jena.de/ImgLibPDB/Jena3D/doc/jmol_scripting/index.htm#select > > > Also how do I make the selected residues of "Style" --> "Theme"-->"Trace" > > from the script? > The command is: > > trace on > > See the documentation at > http://www.imb-jena.de/ImgLibPDB/Jena3D/doc/jmol_scripting/index.htm#trace > for details. > > Regards, > Rolf > > > ------------------------------------------------------------------------------ > This SF.Net email is sponsored by the Verizon Developer Community > Take advantage of Verizon's best-in-class app development support > A streamlined, 14 day to market process makes app distribution fast and > easy > Join now and get one step closer to millions of Verizon customers > http://p.sf.net/sfu/verizon-dev2dev > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Andy Lu
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