That sounds way cool! Do you have example scripts, screencasts, movies?? Best regards, Jan
"Robert Hanson" <[email protected]> skrev: > With luck in about a week a new exhibit on nanotechnology will roll out at > the Epcot Center in Florida. One of the three centerpieces is called "Touch > a Molecule" and involves absolutely cutting edge Jmol. We have.... > > infinite tours through silicon and quartz crystals and liquid water > featuring: > > -- set navigationMode (takes you right into the structure) > -- set navZ nnn (speed of navigation, both forward and backward) > -- set navigationPeriodic (makes for a never-ending experience) > -- new set zShadePower (nonlinear fog for a very spooky effect) > -- new set slabByAtom (no half-slabbed atoms) > -- new set slabByMolecule (no partial molecules) > > hemoglobin oxygenation animation featuring: > > -- new XML JVXL mesh compression for animating surfaces > -- new isosurface SLAB option does a clean removal of a > section of an isosurface based on any defined plane > -- new set waitForMoveTo FALSE allows starting a moveTo > operation and letting it run like spinning so that code can > continue, and buttons can continue to be operated. > -- new moveto STOP option to stop that. > -- new mouse binding DOUBLE-CLICK LEFT bound to the > _stopMotion action allows user to stop the moveTo > operations running in the no-wait mode. > -- new PDB reader option lets you just have a sequential set of "frames" > kind of like the old XYZ file option but for proteins, that can be > read as a trajectory, saving immense amounts of memory. > > rhinovirus (4rhv) full capsid ( FILTER "biomolecule 1;*.CA") > animation featuring two buttons "Blow Apart" and "Reassemble" > and highlighting: > > -- new set pickingStyle drag; set drag selected allowing direct > dragging of pieces of a structure. This is WAY cool. You can > drag the pieces out while Jmol is putting them back in. Guess > who will win in the long run? I could imagine this to be a standard > feature -- letting you move whole sections of a protein out and have > look into them, then from the "exploded view" letting Jmol > return them to their original location for you. Sort of like > taking the engine of a car apart and having an expert mechanic > who takes over and does the dirty work for you in the end. > -- new set picking select chain and set picking select polymer > (this is important when symmetry is present, because there might be > 12 chains all with the same designation, but they are separate > molecular fragments (separate "polymers") > -- new set preserveState FALSE option to save memory for large > systems > -- new TIMEOUT command allows an operation similar to JavaScript's > setTimeOut method, but all within Jmol. THIS IS VERY COOL! > I think it opens the door to all sorts of game-like scenarios. > > > all involve > > -- use of actual PNG images as the source of the Jmol state > -- new Jmol.js option that allows running JavaScript instead of > directly starting a Jmol script > -- new LOG command allowing script to write information directly > to files (sort of like the C++ "printf" command, but easier to use). > -- new set allowMultiTouch option for multi-touch screens > -- new JmolMultiTouchDriver.exe for the NewWindow screen (HP TouchSmart) > -- new set logCommands option to log command history to a file > -- new set logGestures option to log flick, pan, and zoom gestures > -- 10-50% speed enhancement in script processing. > > What a month! Alas, my break is over -- time to go back to work.... > > Bob > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > -------------------------------- ------------------------------------------------------------------------------ > The Planet: dedicated and managed hosting, cloud storage, colocation > Stay online with enterprise data centers and the best network in the business > Choose flexible plans and management services without long-term contracts > Personal 24x7 support from experience hosting pros just a phone call away. > http://p.sf.net/sfu/theplanet-com -------------------------------- _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > ------------------------------------------------------------------------------ The Planet: dedicated and managed hosting, cloud storage, colocation Stay online with enterprise data centers and the best network in the business Choose flexible plans and management services without long-term contracts Personal 24x7 support from experience hosting pros just a phone call away. http://p.sf.net/sfu/theplanet-com _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
