Will have. Need to check permissions.
2010/2/4 Jan Halborg Jensen <[email protected]>
> That sounds way cool! Do you have example scripts, screencasts, movies??
>
> Best regards, Jan
>
> "Robert Hanson" <[email protected]> skrev:
> > With luck in about a week a new exhibit on nanotechnology will roll out
> at
> > the Epcot Center in Florida. One of the three centerpieces is called
> "Touch
> > a Molecule" and involves absolutely cutting edge Jmol. We have....
> >
> > infinite tours through silicon and quartz crystals and liquid water
> > featuring:
> >
> > -- set navigationMode (takes you right into the structure)
> > -- set navZ nnn (speed of navigation, both forward and backward)
> > -- set navigationPeriodic (makes for a never-ending experience)
> > -- new set zShadePower (nonlinear fog for a very spooky effect)
> > -- new set slabByAtom (no half-slabbed atoms)
> > -- new set slabByMolecule (no partial molecules)
> >
> > hemoglobin oxygenation animation featuring:
> >
> > -- new XML JVXL mesh compression for animating surfaces
> > -- new isosurface SLAB option does a clean removal of a
> > section of an isosurface based on any defined plane
> > -- new set waitForMoveTo FALSE allows starting a moveTo
> > operation and letting it run like spinning so that code can
> > continue, and buttons can continue to be operated.
> > -- new moveto STOP option to stop that.
> > -- new mouse binding DOUBLE-CLICK LEFT bound to the
> > _stopMotion action allows user to stop the moveTo
> > operations running in the no-wait mode.
> > -- new PDB reader option lets you just have a sequential set of "frames"
> > kind of like the old XYZ file option but for proteins, that can be
> > read as a trajectory, saving immense amounts of memory.
> >
> > rhinovirus (4rhv) full capsid ( FILTER "biomolecule 1;*.CA")
> > animation featuring two buttons "Blow Apart" and "Reassemble"
> > and highlighting:
> >
> > -- new set pickingStyle drag; set drag selected allowing direct
> > dragging of pieces of a structure. This is WAY cool. You can
> > drag the pieces out while Jmol is putting them back in. Guess
> > who will win in the long run? I could imagine this to be a standard
> > feature -- letting you move whole sections of a protein out and have
> > look into them, then from the "exploded view" letting Jmol
> > return them to their original location for you. Sort of like
> > taking the engine of a car apart and having an expert mechanic
> > who takes over and does the dirty work for you in the end.
> > -- new set picking select chain and set picking select polymer
> > (this is important when symmetry is present, because there might be
> > 12 chains all with the same designation, but they are separate
> > molecular fragments (separate "polymers")
> > -- new set preserveState FALSE option to save memory for large
> > systems
> > -- new TIMEOUT command allows an operation similar to JavaScript's
> > setTimeOut method, but all within Jmol. THIS IS VERY COOL!
> > I think it opens the door to all sorts of game-like scenarios.
> >
> >
> > all involve
> >
> > -- use of actual PNG images as the source of the Jmol state
> > -- new Jmol.js option that allows running JavaScript instead of
> > directly starting a Jmol script
> > -- new LOG command allowing script to write information directly
> > to files (sort of like the C++ "printf" command, but easier to use).
> > -- new set allowMultiTouch option for multi-touch screens
> > -- new JmolMultiTouchDriver.exe for the NewWindow screen (HP TouchSmart)
> > -- new set logCommands option to log command history to a file
> > -- new set logGestures option to log flick, pan, and zoom gestures
> > -- 10-50% speed enhancement in script processing.
> >
> > What a month! Alas, my break is over -- time to go back to work....
> >
> > Bob
> >
> > --
> > Robert M. Hanson
> > Professor of Chemistry
> > St. Olaf College
> > 1520 St. Olaf Ave.
> > Northfield, MN 55057
> > http://www.stolaf.edu/people/hansonr
> > phone: 507-786-3107
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
>
> --------------------------------
>
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>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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