A suggestion:
If that is all you have, I would suggest pre-aligning. It's easy enough with
those other programs --- just get the offsets necessary and then apply them
in Jmol using
translate {some atom list} {x.xxx y.yyy z.zzz}
if you don't want to create all new model files.
On Mon, Mar 8, 2010 at 8:43 AM, Kersten Schroeder
<[email protected]>wrote:
> Dear Robert,
>
> I really enjoy Jmol and am currently using it on a website I help create
> for the kink-turn RNA motif (
> http://www.dundee.ac.uk/biocentre/nasg/kturn/kturns_all.php).
>
> Do you plan to develop a way to align model 1 onto model 2 in Jmol script?
> Pairfit in PyMol does it, so there may be a python code available to help
> develop in Javascript. I want to align one model (of a list of 30) to
> another model (of the same list of 30). Therefore, pre-aligning elsewhere
> would need to be done about 900 times.
>
> I look forward to your input. Thank you and have a good day.
>
> Kersten Schroeder
>
> Kersten Schroeder, Ph.D.
> MSI/WTB complex,
> Dow Street,
> University of Dundee,
> Dundee DD1 5EH
> UK
>
>
>
> ************************************************************
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>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
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Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
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http://p.sf.net/sfu/intel-sw-dev
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