I think what I'm thinking of is considerably more simplistic and less
general -- just the ability to specify two sets of atoms and have Jmol align
one set to the other via an optimized rotation and translation.
That's what you are interested in, right Kersten?
Bob
On Wed, Mar 10, 2010 at 12:47 PM, Andreas Prlic <[email protected]> wrote:
> no, protein only...
>
>
> On Wed, Mar 10, 2010 at 10:43 AM, Robert Hanson <[email protected]>wrote:
>
>> Ah, that's useful information, Andreas. Does it also work with nucleic
>> acids?
>>
>> On Wed, Mar 10, 2010 at 12:11 PM, Andreas Prlic <[email protected]> wrote:
>>
>>> Hi,
>>>
>>> We are using Jmol to visualize protein structure alignments as part of
>>> the RCSB PDB Protein Comparison Tool.
>>> http://www.rcsb.org/pdb/workbench/workbench.do
>>>
>>> It contains the Combinatorial Extension (CE) algorithm (among others),
>>> which is a frequently used algorithm for protein structure alignments. We
>>> recently released it under LGPL as part of BioJava.
>>>
>>>
>>>
>>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
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phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
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