That's fixed. Will upload.
On Sun, May 23, 2010 at 11:14 PM, Robert Hanson <[email protected]> wrote:
> Ah, yes. Not sending the signal to recalculate shapes after restore. For
> now, add this after the restore:
>
> select *;translateselected {0 0 0}
>
> That sends the signal that the atoms have moved positions and that the
> cartoon has to be recalculated.
>
> On Sun, May 23, 2010 at 9:47 PM, Wayne Decatur <[email protected]> wrote:
>
>> I was using the compare command to visualize how the monomers of an
>> asymmetric homodimer are related.
>> So I loaded an edited version of 3lqq into the Jmol application (vers
>> 12.0.RC12). (The file is at http://drop.io/tykyjxt/asset/3lqqab-pdb )
>>
>> Then I ran the following commands by entering one at a time (but you can
>> enter them all at once too and see the same thing):
>>
>> model all;
>> save coord init;
>> compare {1.1} {1.2} rotate translate;
>> restore coord init;
>>
>> In the end, I got what I assume is an undesired result where model 1 wound
>> parts of itself in the initial position to itself to its final positions
>> after the compare step? The distorted result looks similar to motion blur.
>> Did I do something wrong or because there are connect records in the restore
>> coord command acts oddly?
>>
>> Thanks,
>> Wayne
>>
>>
>>
>> ------------------------------------------------------------------------------
>>
>>
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>>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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