see http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.zip
By the way, a quick way to reload the original coordinates is just to use load XYZ "" This doesn't reload the file, it just replaces the current coordinates with those in the file. So the orientation and rendering don't change the way they would if you reloaded the file the normal way with load "". It's pretty fast and doesn't require any memory storage for all those coordinates the way save/restore does. Bob On Sun, May 23, 2010 at 11:28 PM, Robert Hanson <[email protected]> wrote: > That's fixed. Will upload. > > > On Sun, May 23, 2010 at 11:14 PM, Robert Hanson <[email protected]>wrote: > >> Ah, yes. Not sending the signal to recalculate shapes after restore. For >> now, add this after the restore: >> >> select *;translateselected {0 0 0} >> >> That sends the signal that the atoms have moved positions and that the >> cartoon has to be recalculated. >> >> On Sun, May 23, 2010 at 9:47 PM, Wayne Decatur <[email protected]>wrote: >> >>> I was using the compare command to visualize how the monomers of an >>> asymmetric homodimer are related. >>> So I loaded an edited version of 3lqq into the Jmol application (vers >>> 12.0.RC12). (The file is at http://drop.io/tykyjxt/asset/3lqqab-pdb ) >>> >>> Then I ran the following commands by entering one at a time (but you can >>> enter them all at once too and see the same thing): >>> >>> model all; >>> save coord init; >>> compare {1.1} {1.2} rotate translate; >>> restore coord init; >>> >>> In the end, I got what I assume is an undesired result where model 1 >>> wound parts of itself in the initial position to itself to its final >>> positions after the compare step? The distorted result looks similar to >>> motion blur. Did I do something wrong or because there are connect records >>> in the restore coord command acts oddly? >>> >>> Thanks, >>> Wayne >>> >>> >>> >>> ------------------------------------------------------------------------------ >>> >>> >>> _______________________________________________ >>> Jmol-users mailing list >>> [email protected] >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >> >> >> -- >> Robert M. Hanson >> Professor of Chemistry >> St. Olaf College >> 1520 St. Olaf Ave. >> Northfield, MN 55057 >> http://www.stolaf.edu/people/hansonr >> phone: 507-786-3107 >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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