Check the documentation regarding the isosurface command and the options SELECT and IGNORE. Some combination of those two will do exactly what you want. If you use SASURFACE and you want the same scale as geosurface or dots or spacefill, be sure to use SASURFACE 0.
Some reason not to just use spacefill? Or are you already using that within a translucent surface? I should probably remove the geosurface-dots motion business. It's not a much-used shape, and I'm not sure it makes any real difference in rendering speed. Bob On Tue, Jun 1, 2010 at 5:45 AM, Roni Gordon <[email protected]> wrote: > Hello, > > I'm trying to show the "shrink-wrapped" surface of a ligand in Jmol > -- but it appears that "isosurface" will simply render the portion of > the complete (i.e. all loaded models) solvent-accessible > surface. For a partially buried ligand, this breaks the surface > noticeably. "geoSurface" seems to be a close approximation, but it > renders as "spacefill", and turns into "dots" during rotation. > > Is there an option to only consider the requested {atom-expression} > when calculating the surface -- that is, as though no other atoms are > present? > > Thanks, > > Roni > > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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