Bob,
The thought never crossed my mind. I knew you were juggling chain saws
with all the new Jmol additions/changes. My wife would tell you. I whine
when I think I'm being ignored.
You actually solved half this freeze-up problem for me. I did not fully
appreciate that model kit mode drag molecule (shift to rotate) allowed
independent movement of two fragments or molecules. That's what I was
using the hover for. Your implementation is much smoother.
The other half of the problem related to my conformation rotation. I
think your suggestion may clear up the locking problem on this.
Otis
On 6/10/2010 9:30 AM, Robert Hanson wrote:
Otis -- You probably think I've been ignoring you. Just busy getting
Jmol reading SMILES and SMARTS strings and also generating SMILES
code. That's working now, so back to work on this!
Yes, there are several issues there. Bond picking is also still in
force after leaving model kit mode.
... OK, what was happening was that entering modelKit mode settings
were automatically changed, but leaving it they were not. If you want
to temporarily have a fix, try adding these after that modelKit off
setting:
set picking ident
set bondPicking false
set pickingStyle toggle
In the next release of Jmol this will not be necessary, but won't
hurt, either.
Bob
On Fri, Jun 4, 2010 at 10:16 PM, Otis Rothenberger
<[email protected] <mailto:[email protected]>> wrote:
Bob,
I use a hover call back to independently select then mouse
rotate/translate individual models in the Jmol window. If a call model
kit mode prior to setting up a rotate/translate, then the model
kit mode
hover selection circles persist even though model kit mode is
turned off
prior to calling the rotate/translate process. In plain Jmol script
language, here's the sequence:
1) model kit on.
2) do stuff
3) model kit off
4) Jmol Script: frank off;axes on;moveto 2 front;hover "";set
hoverDelay .001
The above is sufficient to create the hover circle persistence. My
hover
call back is:
function processHover(appNum, messageString, indexNum) {
if (fragRotPicOn) {
execScript("select within(branch, {atomIndex=1000}, {atomIndex
= _atomHovered});");
}
}
But the problem exists even if the Boolean above is set to false. In
other words, "frank off;axes on;moveto 2 front;hover "";set hoverDelay
..001" is enough to create the problem.
Is there any direct way to turn the model kit hover circles of other
than "hover off?" The latter stops the persistence, but it also
kills my
callback.
I might as well also ask you to remind me what the code is for the
maximum atomIndex. I know that I should not be using the
atomIndex=1000
trick.
Otis
--
Otis Rothenberger
chemagic.com <http://chemagic.com>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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_______________________________________________
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--
Otis Rothenberger
chemagic.com
------------------------------------------------------------------------------
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GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the
lucky parental unit. See the prize list and enter to win:
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