Hi Bob, I set up a web page to clarify what I mean: http://weirdbyte.de/jmol-test/html/nav.html
There are three applet, showing a protein in the same orientation. The first applet shows the protein in the normal - non navigation - mode and has some atom obscuring most of the rest. The second applet is in navigation mode and has the default visualRange = 5 setting. According to the documentation this results in "any object in a plane that is less than 5.0 Angstroms across will be clipped automatically". And it works, giving a beautiful clear view, this is what I would like for the non navigation mode, too!. Applet 3 then is also in navigation mode but with visualRange set to 1 so that the notorious atom is not clipped automatically and obscures the view again, the reflection is nice though. I hope this makes my intention clear. Best Alexander ps: congrats for your jmol related publication! ----- Ursprüngliche Mail ----- > Von: "Robert Hanson" <[email protected]> > An: [email protected] > Gesendet: Mittwoch, 25. August 2010 15:58:20 > Betreff: Re: [Jmol-users] camera dependent slab setting > I thought that was what you meant -- the equivalent of visualRange but > for standard mode. > > > On Wed, Aug 25, 2010 at 7:57 AM, Alexander Rose < > [email protected] > wrote: > > > Hi, > > I tried rotationRadius, but it has not the effect visualRange has. In > fact I do not really understand the effect, apart from somehow setting > the zoom and the possible zoom range. That is with 12.0.8. > > > Alex > > > ----- Ursprüngliche Mail ----- > > Von: "Robert Hanson" < [email protected] > > > An: [email protected] > > Gesendet: Dienstag, 24. August 2010 22:24:17 > > > Betreff: Re: [Jmol-users] camera dependent slab setting > > > > > Indeed! > > > > set rotationRadius (Angstroms) > > > > > > > > Sets the nominal rotation radius for the model effectively setting > > the > > size of the model at zoom 100 . Normally set to the radius that will > > contain within the screen the entire model when rotated relative to > > the default rotation center. > > > > > > > > :) > > > > Bob > > > > > > > > On Mon, Aug 23, 2010 at 5:16 AM, Alexander Rose < > > [email protected] > wrote: > > > > > > > > Because its such a different experience I came to think that > > something > > like visualRange would be useful for the non nav mode?! > > > > > > Best > > Alexander > > > > > > > > > > > > > > -- > > Robert M. Hanson > > Professor of Chemistry > > St. Olaf College > > 1520 St. Olaf Ave. > > Northfield, MN 55057 > > http://www.stolaf.edu/people/hansonr > > phone: 507-786-3107 > > > > > > If nature does not answer first what we want, > > it is better to take what answer we get. > > > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > ------------------------------------------------------------------------------ > > Sell apps to millions through the Intel(R) Atom(Tm) Developer > > Program > > Be part of this innovative community and reach millions of netbook > > users > > worldwide. Take advantage of special opportunities to increase > > revenue > > and > > speed time-to-market. Join now, and jumpstart your future. > > http://p.sf.net/sfu/intel-atom-d2d > > > _______________________________________________ > > Jmol-users mailing list > > [email protected] > > https://lists.sourceforge.net/lists/listinfo/jmol-users > > ------------------------------------------------------------------------------ > Sell apps to millions through the Intel(R) Atom(Tm) Developer Program > Be part of this innovative community and reach millions of netbook > users > worldwide. Take advantage of special opportunities to increase revenue > and > speed time-to-market. Join now, and jumpstart your future. > http://p.sf.net/sfu/intel-atom-d2d > > > > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > ------------------------------------------------------------------------------ > Sell apps to millions through the Intel(R) Atom(Tm) Developer Program > Be part of this innovative community and reach millions of netbook > users > worldwide. Take advantage of special opportunities to increase revenue > and > speed time-to-market. Join now, and jumpstart your future. > http://p.sf.net/sfu/intel-atom-d2d > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ This SF.net Dev2Dev email is sponsored by: Show off your parallel programming skills. Enter the Intel(R) Threading Challenge 2010. http://p.sf.net/sfu/intel-thread-sfd _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
