Hi, ----- Ursprüngliche Mail ----- > Von: "Robert Hanson" <[email protected]> > An: [email protected] > Gesendet: Freitag, 3. September 2010 16:46:50 > Betreff: Re: [Jmol-users] camera dependent slab setting > It seems to me that is what the standard SLAB command is for. Right? >
In a way, but it's static, the slab is not dependent on the zoom. So when I zoom in more deeply, I would have to adjust the slab setting to show less, and when I zoom out to show more again. This fine when creating images or focusing on one area, but when exploring a larger part of a protein it becomes annoying and I miss such a feature as it is available in other viewers. Best Alexander > If you use > > slab on > slab 60 # or whatever > set slabByAtom > > it might be very close to what you are talking about. > > Bob > > > > > On Fri, Sep 3, 2010 at 9:36 AM, Alexander Rose < > [email protected] > wrote: > > > Hi Bob, > > I set up a web page to clarify what I mean: > http://weirdbyte.de/jmol-test/html/nav.html > > There are three applet, showing a protein in the same orientation. The > first applet shows the protein in the normal - non navigation - mode > and has some atom obscuring most of the rest. The second applet is in > navigation mode and has the default visualRange = 5 setting. According > to the documentation this results in "any object in a plane that is > less than 5.0 Angstroms across will be clipped automatically". And it > works, giving a beautiful clear view, this is what I would like for > the non navigation mode, too!. Applet 3 then is also in navigation > mode but with visualRange set to 1 so that the notorious atom is not > clipped automatically and obscures the view again, the reflection is > nice though. I hope this makes my intention clear. > > > Best > Alexander > > > ps: congrats for your jmol related publication! > > > ----- Ursprüngliche Mail ----- > > Von: "Robert Hanson" < [email protected] > > > An: [email protected] > > Gesendet: Mittwoch, 25. August 2010 15:58:20 > > > > > Betreff: Re: [Jmol-users] camera dependent slab setting > > I thought that was what you meant -- the equivalent of visualRange > > but > > for standard mode. > > > > > > On Wed, Aug 25, 2010 at 7:57 AM, Alexander Rose < > > [email protected] > wrote: > > > > > > Hi, > > > > I tried rotationRadius, but it has not the effect visualRange has. > > In > > fact I do not really understand the effect, apart from somehow > > setting > > the zoom and the possible zoom range. That is with 12.0.8. > > > > > > Alex > > > > > > ----- Ursprüngliche Mail ----- > > > Von: "Robert Hanson" < [email protected] > > > > An: [email protected] > > > Gesendet: Dienstag, 24. August 2010 22:24:17 > > > > > Betreff: Re: [Jmol-users] camera dependent slab setting > > > > > > > > > Indeed! > > > > > > set rotationRadius (Angstroms) > > > > > > > > > > > > Sets the nominal rotation radius for the model effectively setting > > > the > > > size of the model at zoom 100 . Normally set to the radius that > > > will > > > contain within the screen the entire model when rotated relative > > > to > > > the default rotation center. > > > > > > > > > > > > :) > > > > > > Bob > > > > > > > > > > > > On Mon, Aug 23, 2010 at 5:16 AM, Alexander Rose < > > > [email protected] > wrote: > > > > > > > > > > > > Because its such a different experience I came to think that > > > something > > > like visualRange would be useful for the non nav mode?! > > > > > > > > > Best > > > Alexander > > > > > > > > > > > > > > > > > > > > > -- > > > Robert M. Hanson > > > Professor of Chemistry > > > St. Olaf College > > > 1520 St. Olaf Ave. > > > Northfield, MN 55057 > > > http://www.stolaf.edu/people/hansonr > > > phone: 507-786-3107 > > > > > > > > > If nature does not answer first what we want, > > > it is better to take what answer we get. > > > > > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > > > ------------------------------------------------------------------------------ > > > Sell apps to millions through the Intel(R) Atom(Tm) Developer > > > Program > > > Be part of this innovative community and reach millions of netbook > > > users > > > worldwide. Take advantage of special opportunities to increase > > > revenue > > > and > > > speed time-to-market. Join now, and jumpstart your future. > > > http://p.sf.net/sfu/intel-atom-d2d > > > > > _______________________________________________ > > > Jmol-users mailing list > > > [email protected] > > > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > ------------------------------------------------------------------------------ > > Sell apps to millions through the Intel(R) Atom(Tm) Developer > > Program > > Be part of this innovative community and reach millions of netbook > > users > > worldwide. Take advantage of special opportunities to increase > > revenue > > and > > speed time-to-market. Join now, and jumpstart your future. > > http://p.sf.net/sfu/intel-atom-d2d > > > > > > > > _______________________________________________ > > Jmol-users mailing list > > [email protected] > > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > > > > -- > > Robert M. Hanson > > Professor of Chemistry > > St. Olaf College > > 1520 St. Olaf Ave. > > Northfield, MN 55057 > > http://www.stolaf.edu/people/hansonr > > phone: 507-786-3107 > > > > > > If nature does not answer first what we want, > > it is better to take what answer we get. > > > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > ------------------------------------------------------------------------------ > > Sell apps to millions through the Intel(R) Atom(Tm) Developer > > Program > > Be part of this innovative community and reach millions of netbook > > users > > worldwide. Take advantage of special opportunities to increase > > revenue > > and > > speed time-to-market. Join now, and jumpstart your future. > > http://p.sf.net/sfu/intel-atom-d2d > > _______________________________________________ > > Jmol-users mailing list > > [email protected] > > https://lists.sourceforge.net/lists/listinfo/jmol-users > > ------------------------------------------------------------------------------ > > This SF.net Dev2Dev email is sponsored by: > > Show off your parallel programming skills. > Enter the Intel(R) Threading Challenge 2010. > http://p.sf.net/sfu/intel-thread-sfd > > > > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > ------------------------------------------------------------------------------ > This SF.net Dev2Dev email is sponsored by: > > Show off your parallel programming skills. > Enter the Intel(R) Threading Challenge 2010. > http://p.sf.net/sfu/intel-thread-sfd > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ This SF.net Dev2Dev email is sponsored by: Show off your parallel programming skills. 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