On Sat, Sep 4, 2010 at 9:02 PM, Otis Rothenberger <osrot...@chemagic.com>wrote:
> Bob,
>
> The image file (gif) loads directly to any page using an image tag with the
> Resolver's url as the image src. Although it's dynamically generated from
> the query string, ii's simply a gif image. Anyone can load it. No problem.
>
> With the JME file, I'm still on an embedded JME Editor train of thought.
> Since the Resolver returns a JME file that retains the stereochemistry of
> the submitted Jmol model, it can be input into JME to give a correct wedge
> bond drawaing of the model in the Jmol window. JME will not read a served
> file, so Jmol has to call the Resolver for the JME file and then give it to
> JME Editor via JavaScript.
>
> Maybe I just answered my own question! Is the above legal with the signed
> applet? If you're using the signed applet, can you use AJAX to put the
> Resolver returned JME string into a JavaScript variable?
>
Maybe. That's an interesting question. It deserves testing. There are subtle
security issues Java has set up even with the signed applet, and it's
specifically in relation to reading files and doing javascript in the same
thread of commands.
>
>
> Quick unrelated question: Is the following the correct syntax for swapping
> in a new set of partial charges??
>
> var x = Array(partialChargesAsCommaDelimetdStrings)
> {*).partialCharge = {*}.partialCharge.x
>
>
> {*}.partialCharges = [0.14, 0.16, 0.18, ....]
I saw your other message -- it was right.
>
> Otis
>
> Otis Rothenbergerchemagic.com
>
>
> On 9/4/2010 8:37 PM, Robert Hanson wrote:
>
>
>
> On Fri, Sep 3, 2010 at 3:02 PM, Otis Rothenberger
> <osrot...@chemagic.com>wrote:
>
>> This is an outgrowth of the gif image note, but its a new subject. So new
>> chain...
>>
>> Here's a true Jmol depict - i.e. Jmol model kit mode 3D --> JME stereo 2D
>>
>> http://chemagic.com/web_molecules/script_page_large.aspx
>>
>> Click The Molecular Editor link; Click the Draw link. Click the Depict
>> link;
>>
>> The appropriate query to NIH Resolver is:
>>
>> http://cactus.nci.nih.gov/chemical/structure/CCC(C)CC/file?format=jme<http://cactus.nci.nih.gov/chemical/structure/CCC%28C%29CC/file?format=jme>
>>
>> Bob, is this one worth building into Jmol like the Resolver molfile load?
>> If it's built into Jmol, them users embedding JME should be able to use it
>> with the signed Jmol applet sans server side programming.
>>
>
> You lost me there...
>
>
>> Unless JME has a signed applet version, I don't think you can pass the
>> Resolver data directly to JME. If the JME file comes into a Jmol/JME
>> combined page via Jmol, my guess is that it's legal for the signed Jmol
>> applet to pass the data to JME via JavaScript???
>>
>
> Are you interested in processing the PNG/JPG image coming from NIH or just
> the JME string?
>
>
>>
>> Otis
>>
>> --
>> Otis Rothenbergerchemagic.com
>>
>>
>>
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>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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