Hi All, I have recently discovered what I think is erroneous output for turns when using calculate structure. Beta turns contain four residues, but the segments that are colored blue after using calculate structure are from two to five residues long. Some of the ones that are three and five residues contain a hydrogen bond between the residues expected for a beta turn. It appears that some turns are being marked short by one residue and others are long by a residue. I get these results using the application with 12.0.34 and on Proteopedia by adding '?JMOLJAR=http://chemapps.stolaf.edu/jmol/docs/examples-12/JmolAppletSigned0.jar' to the page url. It occurs with myohemerythrin (2mhr.pdb) and domain 2 of chain a of glycogen phosphorylase.
Karl Karl M. Oberholser, Ph.D. Phone: Emeritus Professor of Chemistry Voice: 717-766-0512 Chemistry & Biochemistry Dept. Fax: 717-691-6046 Messiah College e-mail: [email protected] P.O. Box 3049 One College Avenue Grantham, Pa 17027
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