Hi, Furthermore:
On Fri, Mar 4, 2011 at 1:15 AM, Robert Hanson <[email protected]> wrote: > T : A:65_A:66 An R-L nest that is part of a Schellmann loop > T : A:68_A:69 A type I beta-turn > T : A:86_A:86 A type I turn (also a niche3/4 bound to a water) > T : A:110_A:110 Hmmm. Not a turn. Looks like the helix from 93-113 is being bent out of shape by the metal-binding residues. > T : A:115_A:117 A type II turn overlapping an L-R nest bound to Tyr-18 phenol OH. So, yes, most of these are turns. I would add that I have no doubt Jmol has a correct DSSP implementation, and that DSSP generally gets it right. However, I'm not fond of the idea of 3 and 5 residue beta turns, but that is inevitable when there is overlap between structure, and you have to compress it into a single 'sequence' like "...HHHHTT...". gilleain ------------------------------------------------------------------------------ What You Don't Know About Data Connectivity CAN Hurt You This paper provides an overview of data connectivity, details its effect on application quality, and explores various alternative solutions. http://p.sf.net/sfu/progress-d2d _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
