Following instructions provided by Ángel Herráez, here is an easy "recipe"
to show a docking result, i.e. a receptor-ligand model (pdb receptor,
pdbqt ligand generated by Autodock).
I work with two differente files, my first approach was with the receptor
and the ligand structures in the same file. Managing two files, we are
able to define different settings for the receptor and for the ligand.
<script>
jmolInitialize("./jmol");
jmolCheckBrowser("popup", "./browsercheck", "onClick");
jmolApplet(300, 'set appendNew false; load "receptor.pdb"; cpk
off; wireframe off; cartoon; color cartoons structure; frame all;
load append "ligand.pdbqt"');
</script>
Best regards.
> Hello, i would like to find examples about how to define default values
> for a receptor-ligand model (pdb format).
>
> <script>
> jmolApplet(400, "load 1.1_1.1_1__receptor.pdb");
> </script>
>
> For us is useful to load the applet showing "ribbons" and "bonds" for the
> receptor and "bonds" only for the ligand.
>
> Are any available Jmol example settings with receptor-ligand models?
> Thank you.
>
>
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