It's true, thank you very much. > note that "frame all" there does nothing -- just shows frame 1 (unless > that > receptor file has more than one model) > > On Mon, Mar 14, 2011 at 10:07 AM, <[email protected]> wrote: > >> Following instructions provided by Ángel Herráez, here is an easy >> "recipe" >> to show a docking result, i.e. a receptor-ligand model (pdb receptor, >> pdbqt ligand generated by Autodock). >> >> I work with two differente files, my first approach was with the >> receptor >> and the ligand structures in the same file. Managing two files, we are >> able to define different settings for the receptor and for the ligand. >> >> <script> >> jmolInitialize("./jmol"); >> jmolCheckBrowser("popup", "./browsercheck", "onClick"); >> jmolApplet(300, 'set appendNew false; load "receptor.pdb"; cpk >> off; wireframe off; cartoon; color cartoons structure; frame all; >> load append "ligand.pdbqt"'); >> </script> >> >> Best regards. >> >> > Hello, i would like to find examples about how to define default >> values >> > for a receptor-ligand model (pdb format). >> > >> > <script> >> > jmolApplet(400, "load 1.1_1.1_1__receptor.pdb"); >> > </script> >> > >> > For us is useful to load the applet showing "ribbons" and "bonds" for >> the >> > receptor and "bonds" only for the ligand. >> > >> > Are any available Jmol example settings with receptor-ligand models? >> > Thank you. >> > >> > >> > >> ------------------------------------------------------------------------------ >> > Free Software Download: Index, Search & Analyze Logs and other IT data >> in >> > Real-Time with Splunk. Collect, index and harness all the fast moving >> IT >> > data >> > generated by your applications, servers and devices whether physical, >> > virtual >> > or in the cloud. Deliver compliance at lower cost and gain new >> business >> > insights. http://p.sf.net/sfu/splunk-dev2dev >> > _______________________________________________ >> > Jmol-users mailing list >> > [email protected] >> > https://lists.sourceforge.net/lists/listinfo/jmol-users >> > >> >> >> >> >> ------------------------------------------------------------------------------ >> Colocation vs. Managed Hosting >> A question and answer guide to determining the best fit >> for your organization - today and in the future. >> http://p.sf.net/sfu/internap-sfd2d >> _______________________________________________ >> Jmol-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > ------------------------------------------------------------------------------ > Colocation vs. Managed Hosting > A question and answer guide to determining the best fit > for your organization - today and in the future. > http://p.sf.net/sfu/internap-sfd2d_______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users >
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