Thanks Bob, sorry for not answering before I was travelling... I think I
miss something... what you say is exactly what I do above right?
I run the applet with:
$JMOL = "<script type=\"text/javascript\">
jmolInitialize(\"Jmol-12new\", true);
jmolSetAppletColor(\"white\");
var jmolcmds = [
\"load $jmolfile\",
\"set frank off; select all; hbonds off; spin off; wireframe off; spacefill
off; trace off; set ambient 40; set specpower 40; slab off; ribbons off;
cartoons off; label off; monitor off\",
\"set isosurfacePropertySmoothing TRUE\",
...
\"script Jmol-12new/myJMOLfunctions.spt\",
\"javascript appletLoaded()\"
];
jmolApplet([450,450], jmolcmds.join(\"; \"));
</script>";
foreach ($AllResidues as $residue){
if (array_key_exists($residue, $SelectedResiduesHash)){
echo "<script
type=\"text/javascript\">appletLoaded(\"$residue\")</script>";
}
And the function appletLoaded looks like:
<script type=\"text/javascript\">
function appletLoaded(res){
if (res){
var state=jmolGetPropertyAsString(\"stateInfo\");
alert(res + ' --- ' + state);
}
}
</script>
In the example I am trying I have 3 residues in $SelectedResiduesHash, so I
get 3 alerts with the appletLoaded function, but I only get the stateinfo
correctly for the last 2 residues, for the first one its value is 'null',
which I think indicates that the applet has not finished loading, right? In
fact I get the same result when I just remove the \"javascript
appletLoaded()\" line, so there is obviously something I am doing wrong...
any idea? Thanks a lot Bob!
Daniel
2011/8/5 Robert Hanson <[email protected]>
> The basic scheme is what you have there:
>
> JmolApplet(.....,"....... javascript appletLoaded()")
>
> then your appletLoaded function will be called, and you can add JmolScript
> or JmolGetPropertyAsArray commands then to that. You must not try to contact
> Jmol until it is ready. Also, in the latest version of Jmol, we have
>
> set readyCallback ....
>
> which specifically calls you back when the applet is ready. Note, however,
> that this event is sent BEFORE the script is executed, not after.
>
> Bob
>
>
>
> On Fri, Aug 5, 2011 at 11:26 AM, Daniel Carbajo
> <[email protected]>wrote:
>
>> Dear everyone,
>> the problem I have is the following:
>> I load a structure in an applet and I check in a hash some residues that I
>> put in wireframe by default. Since this second command is sent by
>> jmolScriptWait just after jmolApplet, it does not succeed as the applet
>> takes time to be built. There is a partial solution here
>> http://jmol.sourceforge.net/jslibrary/index.en.html#jmolApplet but I
>> cannot make it work, it reads:
>>
>> *Note*:
>> It takes some time to build the applet, so if you put some immediate
>> action like jmolScript() or jmolLoadInline() right after the jmolApplet()
>> line,
>> it will probably fail because it will be called before the applet has
>> finished loading. There are two alternatives that will work:
>>
>> - Put the commands inside the call to jmolApplet() (its 2nd argument,
>> script).
>> - Have the browser wait until the applet reports to be finished. To do
>> so, put this at the end of the script sent with applet creation:
>> javascript
>> appletLoaded(); and define a JavaScript function calledappletLoaded() (or
>> any other name you like) that will trigger any further commands.
>>
>>
>>
>>
>> I try the second solution since I have to check the residues in the hash,
>> so I do the following (instead of the putting the residue in wireframe I
>> alert the state, so I can see if the applet has already loaded):
>>
>> <script type=\"text/javascript\">
>> function JmolCargado(res){
>> if (res){
>> var state=jmolGetPropertyAsString(\"stateInfo\");
>> alert(res + ' --- ' + state);
>> }
>> }
>> </script>
>>
>>
>>
>>
>> $JMOL = "<script type=\"text/javascript\">
>> jmolInitialize(\"Jmol-12new\", true);
>> jmolSetAppletColor(\"white\");
>> var jmolcmds = [
>> \"load $jmolfile\",
>> \"set frank off; select all; hbonds off; spin off; wireframe off;
>> spacefill off; trace off; set ambient 40; set specpower 40; slab off;
>> ribbons off; cartoons off; label off; monitor off\",
>> \"set isosurfacePropertySmoothing TRUE\",
>> \"set showAxes true\",
>> \"frame all\",
>> \"display all\",
>> \"select 1.1; cartoon; set propertyColorScheme 'bwr'; color atoms property
>> temperature ABSOLUTE $range\",
>> \"set perspectiveModel 10\",
>> \"set zoomLarge off\",
>> \"move 0 0 0 50 0 0 0 0 2\",
>> \"script Jmol-12new/myJMOLfunctions.spt\",
>> \"javascript appletLoaded()\"
>> ];
>> jmolApplet([450,450], jmolcmds.join(\"; \"));
>> </script>";
>>
>>
>> foreach ($AllResidues as $residue){
>> if (array_key_exists($residue, $SelectedResiduesHash)){
>> echo "<script
>> type=\"text/javascript\">JmolCargado(\"$residue\")</script>";
>> }
>>
>>
>> It works just partially... I have 3 residues in $SelectedResiduesHash so I
>> get 3 alerts (plus one of the line javascript appletLoaded() I don't know
>> why, but I filter it in the javascript function with if(res)); however, the
>> first alert prints a 'null' as the variable 'state' value, which highlights
>> the fact that the command is run BEFORE the applet actually finishes
>> loading. I would really appreciate some help on this... Thanks to everyone!
>> Daniel
>>
>>
>> ------------------------------------------------------------------------------
>> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA
>> The must-attend event for mobile developers. Connect with experts.
>> Get tools for creating Super Apps. See the latest technologies.
>> Sessions, hands-on labs, demos & much more. Register early & save!
>> http://p.sf.net/sfu/rim-blackberry-1
>> _______________________________________________
>> Jmol-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
> ------------------------------------------------------------------------------
> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA
> The must-attend event for mobile developers. Connect with experts.
> Get tools for creating Super Apps. See the latest technologies.
> Sessions, hands-on labs, demos & much more. Register early & save!
> http://p.sf.net/sfu/rim-blackberry-1
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
------------------------------------------------------------------------------
BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA
The must-attend event for mobile developers. Connect with experts.
Get tools for creating Super Apps. See the latest technologies.
Sessions, hands-on labs, demos & much more. Register early & save!
http://p.sf.net/sfu/rim-blackberry-1
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
