This would be a lot easier if you can point me to your test page...
On Sun, Aug 7, 2011 at 5:11 AM, Daniel Carbajo <[email protected]>wrote:
> Thanks Bob, sorry for not answering before I was travelling... I think I
> miss something... what you say is exactly what I do above right?
>
> I run the applet with:
> $JMOL = "<script type=\"text/javascript\">
> jmolInitialize(\"Jmol-12new\", true);
> jmolSetAppletColor(\"white\");
> var jmolcmds = [
> \"load $jmolfile\",
> \"set frank off; select all; hbonds off; spin off; wireframe off; spacefill
> off; trace off; set ambient 40; set specpower 40; slab off; ribbons off;
> cartoons off; label off; monitor off\",
> \"set isosurfacePropertySmoothing TRUE\",
> ...
> \"script Jmol-12new/myJMOLfunctions.spt\",
> \"javascript appletLoaded()\"
> ];
> jmolApplet([450,450], jmolcmds.join(\"; \"));
> </script>";
>
> foreach ($AllResidues as $residue){
> if (array_key_exists($residue, $SelectedResiduesHash)){
> echo "<script
> type=\"text/javascript\">appletLoaded(\"$residue\")</script>";
> }
>
>
>
> And the function appletLoaded looks like:
>
> <script type=\"text/javascript\">
> function appletLoaded(res){
> if (res){
> var state=jmolGetPropertyAsString(\"stateInfo\");
> alert(res + ' --- ' + state);
> }
> }
> </script>
>
>
> In the example I am trying I have 3 residues in $SelectedResiduesHash, so I
> get 3 alerts with the appletLoaded function, but I only get the stateinfo
> correctly for the last 2 residues, for the first one its value is 'null',
> which I think indicates that the applet has not finished loading, right? In
> fact I get the same result when I just remove the \"javascript
> appletLoaded()\" line, so there is obviously something I am doing wrong...
> any idea? Thanks a lot Bob!
> Daniel
>
>
>
> 2011/8/5 Robert Hanson <[email protected]>
>
>> The basic scheme is what you have there:
>>
>> JmolApplet(.....,"....... javascript appletLoaded()")
>>
>> then your appletLoaded function will be called, and you can add JmolScript
>> or JmolGetPropertyAsArray commands then to that. You must not try to contact
>> Jmol until it is ready. Also, in the latest version of Jmol, we have
>>
>> set readyCallback ....
>>
>> which specifically calls you back when the applet is ready. Note, however,
>> that this event is sent BEFORE the script is executed, not after.
>>
>> Bob
>>
>>
>>
>> On Fri, Aug 5, 2011 at 11:26 AM, Daniel Carbajo <
>> [email protected]> wrote:
>>
>>> Dear everyone,
>>> the problem I have is the following:
>>> I load a structure in an applet and I check in a hash some residues that
>>> I put in wireframe by default. Since this second command is sent by
>>> jmolScriptWait just after jmolApplet, it does not succeed as the applet
>>> takes time to be built. There is a partial solution here
>>> http://jmol.sourceforge.net/jslibrary/index.en.html#jmolApplet but I
>>> cannot make it work, it reads:
>>>
>>> *Note*:
>>> It takes some time to build the applet, so if you put some immediate
>>> action like jmolScript() or jmolLoadInline() right after the
>>> jmolApplet() line, it will probably fail because it will be called
>>> before the applet has finished loading. There are two alternatives that will
>>> work:
>>>
>>> - Put the commands inside the call to jmolApplet() (its 2nd
>>> argument, script).
>>> - Have the browser wait until the applet reports to be finished. To
>>> do so, put this at the end of the script sent with applet creation:
>>> javascript
>>> appletLoaded(); and define a JavaScript function calledappletLoaded() (or
>>> any other name you like) that will trigger any further commands.
>>>
>>>
>>>
>>>
>>> I try the second solution since I have to check the residues in the hash,
>>> so I do the following (instead of the putting the residue in wireframe I
>>> alert the state, so I can see if the applet has already loaded):
>>>
>>> <script type=\"text/javascript\">
>>> function JmolCargado(res){
>>> if (res){
>>> var state=jmolGetPropertyAsString(\"stateInfo\");
>>> alert(res + ' --- ' + state);
>>> }
>>> }
>>> </script>
>>>
>>>
>>>
>>>
>>> $JMOL = "<script type=\"text/javascript\">
>>> jmolInitialize(\"Jmol-12new\", true);
>>> jmolSetAppletColor(\"white\");
>>> var jmolcmds = [
>>> \"load $jmolfile\",
>>> \"set frank off; select all; hbonds off; spin off; wireframe off;
>>> spacefill off; trace off; set ambient 40; set specpower 40; slab off;
>>> ribbons off; cartoons off; label off; monitor off\",
>>> \"set isosurfacePropertySmoothing TRUE\",
>>> \"set showAxes true\",
>>> \"frame all\",
>>> \"display all\",
>>> \"select 1.1; cartoon; set propertyColorScheme 'bwr'; color atoms
>>> property temperature ABSOLUTE $range\",
>>> \"set perspectiveModel 10\",
>>> \"set zoomLarge off\",
>>> \"move 0 0 0 50 0 0 0 0 2\",
>>> \"script Jmol-12new/myJMOLfunctions.spt\",
>>> \"javascript appletLoaded()\"
>>> ];
>>> jmolApplet([450,450], jmolcmds.join(\"; \"));
>>> </script>";
>>>
>>>
>>> foreach ($AllResidues as $residue){
>>> if (array_key_exists($residue, $SelectedResiduesHash)){
>>> echo "<script
>>> type=\"text/javascript\">JmolCargado(\"$residue\")</script>";
>>> }
>>>
>>>
>>> It works just partially... I have 3 residues in $SelectedResiduesHash so
>>> I get 3 alerts (plus one of the line javascript appletLoaded() I don't know
>>> why, but I filter it in the javascript function with if(res)); however, the
>>> first alert prints a 'null' as the variable 'state' value, which highlights
>>> the fact that the command is run BEFORE the applet actually finishes
>>> loading. I would really appreciate some help on this... Thanks to everyone!
>>> Daniel
>>>
>>>
>>> ------------------------------------------------------------------------------
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>>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>> ------------------------------------------------------------------------------
>> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA
>> The must-attend event for mobile developers. Connect with experts.
>> Get tools for creating Super Apps. See the latest technologies.
>> Sessions, hands-on labs, demos & much more. Register early & save!
>> http://p.sf.net/sfu/rim-blackberry-1
>> _______________________________________________
>> Jmol-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
>
> ------------------------------------------------------------------------------
> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA
> The must-attend event for mobile developers. Connect with experts.
> Get tools for creating Super Apps. See the latest technologies.
> Sessions, hands-on labs, demos & much more. Register early & save!
> http://p.sf.net/sfu/rim-blackberry-1
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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The must-attend event for mobile developers. Connect with experts.
Get tools for creating Super Apps. See the latest technologies.
Sessions, hands-on labs, demos & much more. Register early & save!
http://p.sf.net/sfu/rim-blackberry-1
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