Thanks, Angel and Bob. Those commands covered it.
________________________________
From: "[email protected]"
<[email protected]>
To: [email protected]
Sent: Wednesday, December 14, 2011 11:17 AM
Subject: Jmol-users Digest, Vol 67, Issue 14
Message: 4
Date: Wed, 14 Dec 2011 16:13:29 +0100
From: " Angel Herr?ez " <[email protected]>
Subject: Re: [Jmol-users] connection of sidechain wireframe to cartoon
via stick
To: Wayne Decatur <[email protected]>, Wayne Decatur
<[email protected]>, [email protected]
Message-ID: <[email protected]>
Content-Type: text/plain; charset=US-ASCII
Hello Wayne
Yes, I know what you want.
Without testing, a couple of hints:
1. This may be (or I may be wrong) what Eric Martz called "vines"
style in Protein Explorer
2. Basically, the way to do it is
set bondMode or;
select sidechain;
wireframe 0.3;
select all;
trace on; // or maybe cartoon on
Try that and if you hit a hard wall I will try to specify more
------------------------------
Message: 5
Date: Wed, 14 Dec 2011 10:17:43 -0600
From: Robert Hanson <[email protected]>
Subject: Re: [Jmol-users] connection of sidechain wireframe to cartoon
via stick
To: [email protected]
Message-ID:
<CAF_YUvWwdRBJbCt-yThRjRQUKuETGmo2qgMYbb0v2LtLp5rx=g...@mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"
Wayne and Angel,
There's one more setting -- sheetSmoothing.
The three settings you need are
set bondModeOr TRUE # default is FALSE
set traceAlpha TRUE # default is TRUE
set sheetSmoothing 0 # default is 1.0
You can use this for any rendering option.
If you use backbone, you don't need to set sheetSmoothing or traceAlpha,
just bondModeOr.
Also --
set bondModeOr true
is the same as
set bondMode OR
it's just that you can check the setting of bondModeOr, and you can't
check the setting of bondMode:
if (bondModeOr) {.....}
Bob
2011/12/14 Angel Herr?ez <[email protected]>
> Hello Wayne
>
> Yes, I know what you want.
> Without testing, a couple of hints:
>
> 1. This may be (or I may be wrong) what Eric Martz called "vines"
> style in Protein Explorer
>
> 2. Basically, the way to do it is
> set bondMode or;
> select sidechain;
> wireframe 0.3;
> select all;
> trace on; // or maybe cartoon on
>
> Try that and if you hit a hard wall I will try to specify more
>
>
>
> ------------------------------------------------------------------------------
> Cloud Computing - Latest Buzzword or a Glimpse of the Future?
> This paper surveys cloud computing today: What are the benefits?
> Why are businesses embracing it? What are its payoffs and pitfalls?
> http://www.accelacomm.com/jaw/sdnl/114/51425149/
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107------------------------------------------------------------------------------
Cloud Computing - Latest Buzzword or a Glimpse of the Future?
This paper surveys cloud computing today: What are the benefits?
Why are businesses embracing it? What are its payoffs and pitfalls?
http://www.accelacomm.com/jaw/sdnl/114/51425149/
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