Jmol does not read molecular orbitals from a Gaussian log-file if a symmetry is present: see two examples http://zhugayevych.me/_sourceforge/doesnt_read_MO.log and http://zhugayevych.me/_sourceforge/does_read_MO.log. You probably always can add "NoSymm" keyword but usually you want to see the symmetry of molecular orbitals.
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