Hello Jay

Two ideas:

1. you should not use FILE after APPEND. There must be a single word after 
load. "Load files" is only needed when multiple files are loaded in one 
command.
That is,
load "file1.cml";
load append "file2.cml";

2. I don't think that "select 2.1" is meaninful regarding the isosurface. You 
can attach isosurfaces to frames/models declaring explicitly that association:

load files "file1.cml" "file2.cml";
isosurface id 0 model 1.1 etc.;
isosurface id 1 model 2.1 etc.;

or something ike that; see "isosurface" options in the online scripting doc.

It could  also --maybe-- be achieved using "frame 2.1" where you use "select 
2.1"
(Doc says "the surface generated is associated with the currently displayed 
model by default")
 

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