Dear Jmol users,
Thanks to Jmol power, we have a script that select a few hundred
molecules from an specific region nearby a surface. In order to
further identify them, labels are been added to this selected group.
Is it possible to save/print these labels to console or a file ?
Thanks again or your kind attention.
Best,
Jen
On 19/10/2012, at 02:22, Robert Hanson <[email protected]> wrote:
{*}.ribbons = (average width of ribbons)
This will be 0 only if there are no ribbons.
On Thu, Oct 18, 2012 at 3:31 PM, Dina Schneidman <[email protected]>
wrote:
Thanks! this is what I need.
On Wed, Oct 17, 2012 at 4:40 PM, Robert Hanson <[email protected]>
wrote:
> That's curious. Files with just CA atoms still produce ribbons.
Please send
> an example file that does not.
It is not a real backbone, just a collection of spheres, given as CA
atoms, so it is not supposed to produce any ribbons.
> You might append after that:
>
> if (!{*}.ribbons) { select protein or nucleic;spacefill only }
what is returned by {*}.ribbons?
>
> On Wed, Oct 17, 2012 at 4:59 PM, Dina Schneidman
<[email protected]> wrote:
>>
>> already tried this, it doesn't work for a file with CA atoms only,
>> because no ribbons can be defined, but it is still considered a
>> protein.
>>
>> On Wed, Oct 17, 2012 at 3:08 PM, Angel Herráez <[email protected]
s>
>> wrote:
>> > Hello Dina
>> >
>> > You can try this:
>> >
>> > select protein,nucleic; ribbons only;
>> > select !(protein,nucleic); spacefill only;
>> > select all;
>> >
>> > And by the way, Jmol applet does not run in the server, but in
the
>> > client
>> > browser!
>> true
>> >
>> > On 17 Oct 2012 at 14:41, Dina Schneidman wrote:
>> >
>> >
>>
>>
>>
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>
>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
>
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> Make your web apps faster with AppDynamics
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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---
---------------------------------------------------------------------
Everyone hates slow websites. So do we.
Make your web apps faster with AppDynamics
Download AppDynamics Lite for free today:
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_______________________________________________
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https://lists.sourceforge.net/lists/listinfo/jmol-users
------------------------------------------------------------------------------
Everyone hates slow websites. So do we.
Make your web apps faster with AppDynamics
Download AppDynamics Lite for free today:
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_______________________________________________
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