Many thanks!

Inbal

 

From: Nicolas Vervelle [mailto:[email protected]] 
Sent: Thursday, October 18, 2012 11:25 AM
To: [email protected]
Subject: Re: [Jmol-users] File size limit

 

Hi,

 

You can check what memory you allow to the JVM.

JVM arguments to allow more memory than default -Xms and -Xmx (initial
and max values)

Try something like java -Xms1024M -jar Jmol.jar

 

Nico

On Thu, Oct 18, 2012 at 10:43 AM, Inbal Tuvi-Arad <[email protected]>
wrote:

Hello to all,

 I'm using Jmol stand-alone version to follow molecular dynamics
results. The files are very big with over 100,000 molecules each, in xyz
format. Jmol does not open them unless I cut them into small pieces of
about 5000-10000 molecules, depending on the number of atoms. Is there a
size/memory limit in Jmol or are there other reasons for that? Can you
suggest a way to go around this? 

Sincerely,

Inbal


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