It seems that stereochemistry gets inverted in JSmol Lite.
I am loading a few amino acids (in MOL format) and they display as D 
forms, not L.

Check for example getting "alanine" from NCI on
http://chemapps.stolaf.edu/jmol/jsmol/lite2.htm
versus
http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm

Super-Lightweight and mirror?
:)



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