Thank you for offering your help. Your expertise on Jmol extension will
certainly become very handy.
Regarding Wikipedia: Joel Sussman and myself took part of Wikimania 2011, and
had the opportunity to meet and discuss with key MediaWiki developers and
Wikipedia leaders. They got inside information on Proteopedia, it's integration
with Jmol, and understood that Jmol never caused problems to Proteopedia. We
offered our help and Proteopedia code.
No progress after that. All this considering a Java based Jmol. I assume that
today they might be more reluctant to using a Javascript centered JSmol.
Still, we are willing to share our experience with Jmol/JSmol over MediaWiki in
Proteopedia in case they changed their mind.
Jaim
On Apr 24, 2013, at 12:47 AM, Nicolas Vervelle wrote:
Hi Jaime,
Good to hear that you have kept working on this
That would be great to have this packaged :)
Is there anything I can do to help ?
If I can, I would like to try to go the Wikimedia hackathon[1] at the end of
May in Amsterdam to discuss about what should be done to the extension to have
it integrated in wikipedia. But I'm not sure I will be in Europe at this time.
I think that security is an important issue to cope with if you want a slight
chance of seeing Jmol used.
Nico
[1] http://www.mediawiki.org/wiki/Amsterdam_Hackathon_2013
On Tue, Apr 23, 2013 at 5:36 PM, Jaime Prilusky
<[email protected]<mailto:[email protected]>> wrote:
Hi Nico,
It's good to know that you will have time for JSmol.
I've done a lot on this direction, and Proteopedia is already rendering with
JSmol when accessed from iPad.
We are also displaying a static image while JSmol loads and renders the model,
smoothly switching to the interactive model when done.
Packaging everything and releasing a JSmol/Jmol extension for Mediawiki is on
my list of tasks, although I've been busy on other Jmol related task.
Jaim
--
Dr Jaime Prilusky
Head Bioinformatics
R&D Bioinformatics and Data Management
Department of Biological Services
Weizmann Institute of Science
76100 Rehovot - Israel
eml: [email protected]<mailto:[email protected]>
fax: 972-8-9344113
tel: 972-8-9344959
OCA, http://oca.weizmann.ac.il<http://oca.weizmann.ac.il/> (the protein
structure/function database)
Proteopedia, http://proteopedia.org<http://proteopedia.org/> (because life has
more than 2D)
On Apr 23, 2013, at 6:13 PM, Nicolas Vervelle wrote:
Hi guys,
I'm thinking on working again on the extension for integrating Jmol into a
MediaWiki wiki.
I haven't followed all the work that has been done recently on Jmol and JSmol.
Do you have any links/explanations for me on what could be use for an
integration into MW ?
* Switching between Jmol and JSmol depending on the browser capabilities
* Displaying a static image by default that could be replaced by a Jmol
viewer when user clicks on it
* Opening Jmol in a new window, that would be scalable
* Disabling javascript in Jmol script
* ...
* anything you can think of
Nico
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