Well perhaps this helps:-) If I get into the error loop, but go to the second
column and load vasp.xml, the error is corrected and stays corrected for some
time, though when it reoccurs, the vasp trick works again. That is, I don't
need a complete page reload.
On Aug 16, 2013, at 4:40 PM, Robert Hanson <[email protected]> wrote:
> Well, this is going to be a tough one. I'm looking at my Mac. Two Safari
> windows, both with http://chemapps.stolaf.edu/jmol/jsmol2/test2.htm One is a
> single line of atoms, the other is fine. On the one that's bad, sometimes I
> can click on a small-molecule link and it will be fine; other times not.
> "Caffeine with MEP" works, maybe because the rendering is done later due to
> the surface.
>
> I have to believe it's a threading issue. Is it possible that Safari is
> multithreaded in JavaScript??
>
> Bob
>
>
>
> On Fri, Aug 16, 2013 at 3:34 PM, Otis Rothenberger <[email protected]>
> wrote:
> After several cache clearings, I'm still seeing the problem:
>
> Version 6.0.5 (7536.30.1)
>
> Mac OS X 10.7.5
>
> --
> Otis Rothenberger
> [email protected]
> http://chemagic.com
>
>
>
>
> On Aug 16, 2013, at 4:25 PM, Robert Hanson wrote:
>
>> Hmm. Really. I'm looking at that one on my Mac now, and it is fine. Try
>> clearing your cache.
>>
>>
>> On Fri, Aug 16, 2013 at 3:22 PM, Bays Philip <[email protected]> wrote:
>> No. Same issue.
>>
>> On Aug 16, 2013, at 4:20 PM, Robert Hanson <[email protected]> wrote:
>>
>>> does
>>>
>>> http://chemapps.stolaf.edu/jmol/jsmol1/test2.htm
>>>
>>> work?
>>>
>>>
>>> On Fri, Aug 16, 2013 at 1:42 PM, Otis Rothenberger <[email protected]>
>>> wrote:
>>> If you start by loading small molecules, then all is well (except for the
>>> old NCI "wake-up" issue). If you then load from RCSB, you get the line
>>> thing. This breaks subsequent small molecule load until you reload the page.
>>>
>>> --
>>> Otis Rothenberger
>>> [email protected]
>>> http://chemagic.com
>>>
>>>
>>>
>>>
>>> On Aug 16, 2013, at 2:07 PM, Robert Hanson wrote:
>>>
>>>> This isn't unique to RCSB, right? All structures are totally broken? If
>>>> not, which links work?
>>>>
>>>>
>>>> On Fri, Aug 16, 2013 at 11:44 AM, Bays Philip <[email protected]> wrote:
>>>> Bob:
>>>> I have tried this on my iPhone (since I do not have any other iOS device)
>>>> and it works. (I k now you are asking for speed tests, but I am seeing
>>>> another issue) On both my laptop and desktop (both macs) I am getting
>>>> "structures" that simply consist of lines in the applet, particularly all
>>>> things loaded from RCSB. Once in that mode, I have to reload the page to
>>>> get anything else to work. This is all in Safari. Things work fine in
>>>> firefox.
>>>>
>>>> Anyone else on a mac observing this?
>>>>
>>>>
>>>> On Aug 16, 2013, at 10:08 AM, Robert Hanson <[email protected]> wrote:
>>>>
>>>>> I would very much appreciate feedback on a new option to increase the
>>>>> rendering speed of JSmol. It is an extension of the "wireframeRotation"
>>>>> idea that allows a variable amount of rendering compromise while a model
>>>>> is in motion. Please try
>>>>>
>>>>> http://chemapps.stolaf.edu/jmol/jsmol1/jsmol.htm
>>>>>
>>>>> Specifically, there are three options under the applet:
>>>>>
>>>>> motion rendering compromises: fastest surface/cartoon none
>>>>>
>>>>> Please try those with different models -- perhaps
>>>>> =1blu
>>>>> caffeine with mep
>>>>> (load +) mo homo
>>>>> PyMOL session - dna
>>>>> flexible fit
>>>>>
>>>>> dragging the model around to see
>>>>> Q: How significant is the speed increase in "surface/cartoon" or
>>>>> "fastest" relative to "none"?
>>>>>
>>>>> Q: Is this a viable solution to the iPad poor-performance problem?
>>>>>
>>>>> Q: Which would you recommend for the default behavior for JSmol?
>>>>>
>>>>> Q: Suggestions?
>>>>>
>>>>>
>>>>> Bob
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Larson-Anderson Professor of Chemistry
>>>>> St. Olaf College
>>>>> Northfield, MN
>>>>> http://www.stolaf.edu/people/hansonr
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>>>> It's a free troubleshooting tool designed for production.
>>>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>>>> Download for free and get started troubleshooting in minutes.
>>>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
>>>>> Jmol-users mailing list
>>>>> [email protected]
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>
>>>> J. Philip Bays
>>>> Emeritus Professor of Chemistry
>>>> Department of Chemistry and Physics
>>>> Saint Mary's College
>>>> Notre Dame, IN 46556
>>>> [email protected]
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>>> It's a free troubleshooting tool designed for production.
>>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>>> Download for free and get started troubleshooting in minutes.
>>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
>>>> _______________________________________________
>>>> Jmol-users mailing list
>>>> [email protected]
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Robert M. Hanson
>>>> Larson-Anderson Professor of Chemistry
>>>> St. Olaf College
>>>> Northfield, MN
>>>> http://www.stolaf.edu/people/hansonr
>>>>
>>>>
>>>> If nature does not answer first what we want,
>>>> it is better to take what answer we get.
>>>>
>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>>> It's a free troubleshooting tool designed for production.
>>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>>> Download for free and get started troubleshooting in minutes.
>>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
>>>> Jmol-users mailing list
>>>> [email protected]
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>> It's a free troubleshooting tool designed for production.
>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>> Download for free and get started troubleshooting in minutes.
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>>> _______________________________________________
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>>>
>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>> ------------------------------------------------------------------------------
>>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>>> It's a free troubleshooting tool designed for production.
>>> Get down to code-level detail for bottlenecks, with <2% overhead.
>>> Download for free and get started troubleshooting in minutes.
>>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
>>> Jmol-users mailing list
>>> [email protected]
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>> J. Philip Bays
>> Emeritus Professor of Chemistry
>> Department of Chemistry and Physics
>> Saint Mary's College
>> Notre Dame, IN 46556
>> [email protected]
>>
>>
>> ------------------------------------------------------------------------------
>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>> It's a free troubleshooting tool designed for production.
>> Get down to code-level detail for bottlenecks, with <2% overhead.
>> Download for free and get started troubleshooting in minutes.
>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
>> _______________________________________________
>> Jmol-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>>
>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>> ------------------------------------------------------------------------------
>> Get 100% visibility into Java/.NET code with AppDynamics Lite!
>> It's a free troubleshooting tool designed for production.
>> Get down to code-level detail for bottlenecks, with <2% overhead.
>> Download for free and get started troubleshooting in minutes.
>> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
>> Jmol-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
> ------------------------------------------------------------------------------
> Get 100% visibility into Java/.NET code with AppDynamics Lite!
> It's a free troubleshooting tool designed for production.
> Get down to code-level detail for bottlenecks, with <2% overhead.
> Download for free and get started troubleshooting in minutes.
> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
> Get 100% visibility into Java/.NET code with AppDynamics Lite!
> It's a free troubleshooting tool designed for production.
> Get down to code-level detail for bottlenecks, with <2% overhead.
> Download for free and get started troubleshooting in minutes.
> http://pubads.g.doubleclick.net/gampad/clk?id=48897031&iu=/4140/ostg.clktrk_______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
J. Philip Bays
Emeritus Professor of Chemistry
Department of Chemistry and Physics
Saint Mary's College
Notre Dame, IN 46556
[email protected]
------------------------------------------------------------------------------
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It's a free troubleshooting tool designed for production.
Get down to code-level detail for bottlenecks, with <2% overhead.
Download for free and get started troubleshooting in minutes.
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