On 01/14/2014 06:14 PM, Roberto Mosca wrote:
> Dear Alexander and Rolf,
>
> thanks for your help! I tried the instruction
>
> Jmol.evaluate(jmolApplet, "print {atomNo=" + atomNo + "}.property_pp");
>
> in the following code:
>
> function pickResidue(jmolObj,msg,atomNo) {
> var pp = Jmol.evaluate(jmolApplet, "print {atomNo=" + atomNo +
> "}.property_pp");
> }
>
>
> after setting the property with the following script:
>
> set frank off
> delete NOT :A
> cartoon ONLY
> color [xFADACB]
> background hover [xFCD6E2]
> color hover [xD60B51]
> font hover 12 sanserif
> hover %[label]
> set hoverDelay 0.01
> select 35; color [xbe1622]; spacefill 70%
> set hoverLabel "P35";
> data "property_pp"
> Q13253_35
> Q13253_35
> Q13253_35
> Q13253_35
> Q13253_35
> Q13253_35
> Q13253_35
> Q13253_35
> Q13253_35
> Q13253_35
> end "property_pp"
>
> set PickCallback "pickResidue"
>
>
> And the variable pp has the value "ERROR" after executing it. Any idea why
> it is so? Or how to debug it?
>
One problem here will be that you didn't set the 'property_pp' to the
correct atom. You would either need "select atomNo=35" or the shortcut
"@35".
And since you selected only a single atom the 'data' section would
presumably only need a single "Q13253_35" line.
But there seems to be a more general problem. I wasn't able to assign a
string to a property in Jmol 14.0.1, just numbers.
After applying the following commands (PDB entry 1OTZ loaded) the result
is "PP:35.0":
select atomno=35;
data "property_pp"
test 35
end "property_pp"
print "PP:" + {atomNo=35}.property_pp;
If "test 35" is replaced with "test_35" the result is "PP:NaN".
The result is the same if I try to set the property directly using this
command:
{atomNo=35}.property_pp = "test 35";
But you should be able to overcome this limitation (or bug?) by storing
the hoverlabel in your own global array, e.g.:
----- Jmol script ------
my_labels = [];
my_labels[35] = "test 35";
------------------------
----- Javascript -------
Jmol.evaluate(jmolApplet, "print my_labels[" + atomNo + "]");
------------------------
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
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