send an example file, please.
You should be able to use
*calculate structure DSSP*
if no structure information is in the file header.
On Wed, Feb 12, 2014 at 1:31 PM, Greeves, Nick <[email protected]>wrote:
> I know Jmol.jar displays PDB files of proteins nicely with various
> cartoon options but I have noticed that if I import a PDB structure into a
> molecular modelling program and then export the structure in various
> formats including PDB (from Spartan) the cartoons do not display in
> Jmol.jar
>
> So my question is this, how does Jmol.jar detect alpha helices and beta
> sheets to be able to display them? Or more helpfully, how can I export
> structure files from modified proteins that will still show the cartoons in
> Jmol? I have a preference for Mac OS X but could use Windows if that is the
> only way.
>
> Best regards
> Nick
> --
> Nick Greeves via OS X Mail
> Director of Teaching and Learning
> Department of Chemistry
> University of Liverpool
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> Crown Street, LIVERPOOL L69 7ZD U.K.
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>
>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
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it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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